![]() It is also reasonable to create an additional page with human-readable name corresponding to the compound, which redirects to the main page of the molecule. Different conformers belonging to the same structural isomer are described in one article. Index numbers are used for distinguishing different structural isomers. The total name for a molecule-related page should be constructed as a chemical formula according to the Hill system and an index number, which makes this page unique. The naming convention for such pages is based on the Hill system. among other information also contains pages related to particular molecules. Use preview functionality as much as possible! Try not to save changes just for testing purposes.Prove your statements by including references to peer reviewed journals.Please follow the general practice of good scientific writing.The most detailed explanation is given on the corresponding page of MediaWiki. Instructions on installing this are available at. Note jmol must be downloaded on a local machine. Jmol3D output is a html file that can be viewed in any web browser that supports jmol. which is a java based software that is open source. Produces a html file, of a 3D graph which can be rotated using the opensource software jmol Default is 40.įurther arguments passed to or from other methods. By default, the first 3 columns of df.Ĭharacter indicating the local directory containing jmol. Vector indicating which axes to use for x, y and z axes. If specified each groupĬharacter, the title (header) of the web page saved if writehtml is TRUE. (\$li or \$co) produced by PCA, COA or other dudi.įactor or vector which describes classes in the df. Typically the output from bga such as the \$ls or \$co files, or other xyz coordinates )Ī matrix or ame containing the x,y,z coordinates. Jmol3D ( df, classvec = NULL, title = NULL, jmoldir = "./jmol/Jmol.js", filename = "output.html", point.size = 40, xyz.axes = c ( 1 : 3 ), scaled = TRUE. topgenes: Topgenes, returns a list of variables at the ends (positive.s.var: Draw xy plots of results of multivariate analysis.suppl: Projection of supplementary data onto axes from a between.sumstats: Summary statistics on xy co-ordinates, returns the slopes and.randomiser: Randomly reassign training and test samples.prettyDend: Draw hierarchical tree of gene expression data with a.plotgenes: Graph xy plot of variable (gene) projections from PCA or COA.plotarrays: Graph xy plot of variable (array) projections from.overview: Draw boxplot, histogram and hierarchical tree of gene.NCI60: Microarray gene expression profiles of the NCI 60 cell lines.khan: Microarray gene expression dataset from Khan et al., 2001.jmol3D: Produce web graph of 3D graph that can be viewed using Jmol.isDataFrame: Converts microarray input data into a data frame suitable for.html3D: Produce web page with a 3D graph that can be viewed using.heatplot: Draws heatmap with dendrograms.graph1D: Plot 1D graph of axis from multivariate analysis.getcol: Specialised colour palette with set of 21 maximally.genes1d: genes1d: list top N variables on one axis.genes: Returns an index of the top N variables at the ends of the x.forrwcoa: Row weighted Correspondence Analysis.dudi.rwcoa: Row weighted Correspondence Analysis.do3d: Generate 3D graph(s) using scatterplot3d. ![]() comparelists: Return the intersect, difference and union between 2 vectors.commonMap: Plot highlights common points between two 1D plots.cia: Coinertia analysis: Explore the covariance between two.chime3D: Produce web graph of 3D graph that can be viewed using Chime.bga.suppl: Between group analysis with supplementary data projection.bga.jackknife: Jackknife between group analysis.aph: Plot 1D graph of results from between group analysis.bet.coinertia: Between class coinertia analysis.asDataFrame: Check that input data is a ame.
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